sveval-package: SV evaluation
In jmonlong/sveval: SV evaluation

sveval-package

R Documentation

SV evaluation

Description

Evaluate SV in a call set against a truth set using overlap-based approaches and sequence comparison for insertions.

Details

Package:	sveval
Type:	Package
Version:	2.2.0
Date:	2023-04-07
License:	MIT

Author(s)

Jean Monlong jmonlong@ucsc.edu

Examples

## Not run: 
eval = svevalOl('calls.vcf', 'truth.vcf')
plot_prcurve(eval$curve)

# Comparing multiple methods
eval.1 = svevalOl('calls1.vcf', 'truth.vcf')
eval.2 = svevalOl('calls2.vcf', 'truth.vcf')
plot_prcurve(list(eval.1$curve, eval.2$curve), labels=c('method1', 'method2'))

## End(Not run)

jmonlong/sveval documentation built on July 31, 2023, 7:50 p.m.