mergeHets | R Documentation |
Merge together heterozygous SVs that are very similar. This should be done for SVs of the same type and genotype. When several SV pairs can be merged in a cluster, only the best pair (best overlap) is merged, hence this could be run several times (e.g. until the size of the output is similar to the input's).
mergeHets(
svs,
min.rol = 0.9,
max.ins.dist = 1,
range.seq.comp = FALSE,
ins.seq.comp = FALSE
)
svs |
GRanges with SV information |
min.rol |
minimum reciprocal overlap to match variants. |
max.ins.dist |
maximum distance for insertions to be clustered. |
range.seq.comp |
compare sequence instead of only overlapping deletions/inversion/etc. Default is FALSE. |
ins.seq.comp |
compare sequence instead of insertion sizes. Default is FALSE. |
an upated GRanges.
Jean Monlong
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