Files in jonalim/mfBiclust

Pipelines for Bi-Clustering Using Matrix Factorization

R/BiclusterExperiment.R R/BiclusterStrategy.R R/addStrat.R R/bcv.R R/bicluster.R R/biclusterGUI.R R/data.R R/examples/addStrat-biclusterGUI.R R/functionalAnnotation.R R/genBiclusters.R R/generics.R R/graphical.R R/helperClasses.R R/helperFunctions.R R/mfBiclust.R data-raw/benchmarks.R data-raw/simulatedBiclusters.R inst/shinyApp/bcvUI.R inst/shinyApp/biclusterUI.R inst/shinyApp/fileUI.R inst/shinyApp/goUI.R inst/shinyApp/server.R inst/shinyApp/ui.R man/BiclusterExperiment-class.Rd man/BiclusterExperiment.Rd man/BiclusterStrategy-class.Rd man/addStrat.Rd man/als_nmf.Rd man/auto_bcv.Rd man/bcNames.Rd man/bcv.Rd man/bicluster-methods.Rd man/biclusterGUI.Rd man/biclusterMatrix2List.Rd man/biclusterNumbers2membershipMatrices.Rd man/cancer_benchmark.Rd man/clean.Rd man/clusteredFeatures.Rd man/clusteredSamples.Rd man/factorHeatmap.Rd man/featureFactor.Rd man/featureThresh.Rd man/filter.biclust.Rd man/genSimData.Rd man/genericFactorization-class.Rd man/genericFit-class.Rd man/getStrat.Rd man/matrixHeatmap.Rd man/method.Rd man/mfBiclust.Rd man/name.Rd man/nclust.Rd man/nipals_pca.Rd man/otsuHelper.Rd man/overlap.Rd man/plot.Rd man/plotDist.Rd man/plotThreshold.Rd man/sampleFactor.Rd man/sampleThresh.Rd man/simdata.Rd man/sizes.Rd man/strategies.Rd man/svd_pca.Rd man/threshAlgo.Rd man/threshold.Rd man/union.biclust.Rd man/wipe.Rd man/wipeExcept.Rd man/yeast_benchmark.Rd packrat/init.R tests/testthat.R tests/testthat/test_BiclusterExperiment.R vignettes/my-vignette.R vignettes/my-vignette.Rmd