sizes: Calculate bicluster sizes

In jonalim/mfBiclust: Pipelines for Bi-Clustering Using Matrix Factorization

Description

Calculates the number of matrix elements in each bicluster. Biclusters must be described in the same format as the output from biclusterMatrix2List.

Usage

sizes(biclusterRows, biclusterCols)

Arguments

biclusterRows	a list of numeric vectors giving the row indices of each bicluster
biclusterCols	a list of numeric vectors giving the column indices of each bicluster

Value

numeric vector

Examples

bce <- BiclusterExperiment(yeast_benchmark[[1]])
bce <- addStrat(bce, k = 2, method = "als-nmf")
bcs <- getStrat(bce, 1)
biclustersAsLists <- biclusterMatrix2List(
 rowxBicluster = clusteredFeatures(bcs),
 biclusterxCol = clusteredSamples(bcs))
sizes(biclusterRows = biclustersAsLists[[1]],
      biclusterCols = biclustersAsLists[[2]])

jonalim/mfBiclust documentation built on May 4, 2019, 4:13 a.m.