wipeExcept: Wipe all biclustering results except one

In jonalim/mfBiclust: Pipelines for Bi-Clustering Using Matrix Factorization

Description

Returns a BiclusterExperiment with the same data and metadata as bce, but with BiclusterExperiment@strategies containing the single specified BiclusterStrategy instance. The BiclusterStrategy to preserve can be specified by name, by index, or by reference to an identical BiclusterStrategy. This function is useful for isolating your "favorite" biclustering result.

Usage

wipeExcept(bce, bcs)

## S4 method for signature 'BiclusterExperiment'
wipeExcept(bce, bcs)

Arguments

bce	A BiclusterExperiment-class object
bcs	A BiclusterStrategy-class object in bce@strategies, or the name or index of an object in bce@strategies

Value

A BiclusterExperiment object

Examples

bce <- BiclusterExperiment(yeast_benchmark[[1]])
bce <- addStrat(bce, k = 2, method = "als-nmf")
bce <- addStrat(bce, k = 5, method = "als-nmf")
wipeExcept(bce, 2) # preserves the second BiclusterStrategy

jonalim/mfBiclust documentation built on May 4, 2019, 4:13 a.m.