biclusterMatrix2List: Convert logical matrices to two lists of rows and columns

In jonalim/mfBiclust: Pipelines for Bi-Clustering Using Matrix Factorization

Description

Given two logical matrices A_{m,k} and B_{k,n} showing which rows and columns are in bicluster k, returns two lists. The first lists the rows in each bicluster. The second lists the columns in each bicluster.

Usage

biclusterMatrix2List(rowxBicluster, biclusterxCol)

Arguments

rowxBicluster	an m x k logical matrix
biclusterxCol	a k x n logical matrix

Value

A list containing two lists

Examples

bce <- BiclusterExperiment(yeast_benchmark[[1]])
bce <- addStrat(bce, k = 2, method = "als-nmf")
bcs <- getStrat(bce, 1)
biclusterLists <- biclusterMatrix2List(clusteredFeatures(bcs),
 clusteredSamples(bcs))
biclusterLists[[1]] # Rows in each bicluster
biclusterLists[[2]] # Cols in each bicluster

jonalim/mfBiclust documentation built on May 4, 2019, 4:13 a.m.