Files in jonalim/mfBiclust
Pipelines for Bi-Clustering Using Matrix Factorization
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/BiclusterExperiment.R
R/BiclusterStrategy.R
R/addStrat.R
R/bcv.R
R/bicluster.R
R/biclusterGUI.R
R/data.R
R/examples/addStrat-biclusterGUI.R
R/functionalAnnotation.R
R/genBiclusters.R
R/generics.R
R/graphical.R
R/helperClasses.R
R/helperFunctions.R
R/mfBiclust.R
data-raw/benchmarks.R
data-raw/simulatedBiclusters.R
data/cancer_benchmark.rda
data/simdata.rda
data/yeast_benchmark.rda
inst/shinyApp/bcvUI.R
inst/shinyApp/biclusterUI.R
inst/shinyApp/fileUI.R
inst/shinyApp/goUI.R
inst/shinyApp/server.R
inst/shinyApp/ui.R
man/BiclusterExperiment-class.Rd
man/BiclusterExperiment.Rd
man/BiclusterStrategy-class.Rd
man/addStrat.Rd
man/als_nmf.Rd
man/auto_bcv.Rd
man/bcNames.Rd
man/bcv.Rd
man/bicluster-methods.Rd
man/biclusterGUI.Rd
man/biclusterMatrix2List.Rd
man/biclusterNumbers2membershipMatrices.Rd
man/cancer_benchmark.Rd
man/clean.Rd
man/clusteredFeatures.Rd
man/clusteredSamples.Rd
man/factorHeatmap.Rd
man/featureFactor.Rd
man/featureThresh.Rd
man/filter.biclust.Rd
man/genSimData.Rd
man/genericFactorization-class.Rd
man/genericFit-class.Rd
man/getStrat.Rd
man/matrixHeatmap.Rd
man/method.Rd
man/mfBiclust.Rd
man/name.Rd
man/nclust.Rd
man/nipals_pca.Rd
man/otsuHelper.Rd
man/overlap.Rd
man/plot.Rd
man/plotDist.Rd
man/plotThreshold.Rd
man/sampleFactor.Rd
man/sampleThresh.Rd
man/simdata.Rd
man/sizes.Rd
man/strategies.Rd
man/svd_pca.Rd
man/threshAlgo.Rd
man/threshold.Rd
man/union.biclust.Rd
man/wipe.Rd
man/wipeExcept.Rd
man/yeast_benchmark.Rd
packrat/.gitignore
packrat/init.R
packrat/packrat.lock
packrat/packrat.opts
tests/testdata/ref_bces.rda
tests/testthat.R
tests/testthat/test_BiclusterExperiment.R
vignettes/my-vignette.R
vignettes/my-vignette.Rmd
vignettes/my-vignette.html
