BiclusterExperiment: Construct a container for biclustering runs

In jonalim/mfBiclust: Pipelines for Bi-Clustering Using Matrix Factorization

Description

Constructs a BiclusterExperiment-class object holding data, with a slot for future biclustering runs performed on that data. To run biclustering, use addStrat().

Usage

BiclusterExperiment(m, bcs = list(),
  phenoData = Biobase::annotatedDataFrameFrom(m, byrow = FALSE),
  featureData = annotatedDataFrameFrom(m, byrow = TRUE), pp = FALSE,
  maxNa = 0)

Arguments

m	The data on which derived BiclusterStrategy objects will be calculated. Should be a matrix or a class coercible to matrix, with samples as columns and features as rows
bcs	May be a list of BiclusterStrategy objects that have been computed from m previously
phenoData	Metadata about the rows of m
featureData	Metadata about the columns of m
pp	Whether to preprocess m by removing rows and columns with excessive missing data
maxNa	If pp, rows and columns with over maxNa elements missing are discarded

Value

A BiclusterExperiment-class object containing the data passed to the constructor

Examples

bce <- BiclusterExperiment(yeast_benchmark[[1]])

jonalim/mfBiclust documentation built on May 4, 2019, 4:13 a.m.