clusteredFeatures: Bicluster-feature matrix

In jonalim/mfBiclust: Pipelines for Bi-Clustering Using Matrix Factorization

Description

Returns a logical matrix A_{m x k} where element A_{i,j} is TRUE if feature i is in bicluster j. Elsewhere in mfBiclust documentation, this format is called a "membership matrix".

Usage

clusteredFeatures(bcs, allBc = FALSE)

## S4 method for signature 'BiclusterStrategy'
clusteredFeatures(bcs, allBc = FALSE)

Arguments

bcs	A BiclusterStrategy
allBc	TRUE to return data from all stored biclusters

Value

A logical matrix

Methods (by class)

• BiclusterStrategy: method for BiclusterStrategy objects

Examples

bce <- BiclusterExperiment(yeast_benchmark[[1]])
bce <- addStrat(bce, k = 2, method = "als-nmf")
bcs <- getStrat(bce, 1)
clusteredFeatures(bcs)

jonalim/mfBiclust documentation built on May 4, 2019, 4:13 a.m.