biclusterGUI: Explore a BiclusterExperiment

In jonalim/mfBiclust: Pipelines for Bi-Clustering Using Matrix Factorization

Description

Opens a shiny GUI to analyze and visualize bicluster analyses.

Usage

biclusterGUI(obj = NULL, ...)

## S4 method for signature 'BiclusterExperiment'
biclusterGUI(obj = NULL, ...)

## S4 method for signature 'ExpressionSet'
biclusterGUI(obj = NULL, ...)

## S4 method for signature 'missing'
biclusterGUI(obj = NULL, ...)

## S4 method for signature 'ANY'
biclusterGUI(obj = NULL, ...)

Arguments

obj	a BiclusterExperiment, an ExpressionSet, or an object coercible to a matrix. If missing, the user must import data from a comma- or space-delimited file using the GUI.
...	Other parameters. dbg = TRUE Runs the GUI in a debug mode that uses algorithm parameters tweaked to sacrifice accuracy for speed.

Value

A Shiny app object

Methods (by class)

• BiclusterExperiment: Default method

• ExpressionSet: Coerces obj to a BiclusterExperiment-class object and runs GUI

• missing: Runs GUI without pre-loading a dataset. Use the "Data" tab to load data.

• ANY: Attempts to encapsulate obj in a BiclusterExperiment-class object and pass it to the GUI

Examples

## Not run: biclusterGUI()
biclusterGUI(yeast_benchmark[[1]])
biclusterGUI(BiclusterExperiment(yeast_benchmark[[1]]))

## End(Not run)

jonalim/mfBiclust documentation built on May 4, 2019, 4:13 a.m.