js2264/periodicDNA: Set of tools to identify periodic occurrences of k-mers in DNA sequences
This R package helps the user identify k-mers (e.g. di- or tri-nucleotides) present periodically in a set of genomic loci (typically regulatory elements). The functions of this package provide a straightforward approach to find periodic occurrences of k-mers in DNA sequences, such as regulatory elements. It is not aimed at identifying motifs separated by a conserved distance; for this type of analysis, please visit MEME website.
Getting started
Browse package contents
Package details |
|
|---|---|
| Bioconductor views | Alignment Coverage DataImport MotifAnnotation MotifDiscovery SequenceMatching Sequencing |
| Maintainer | |
| License | GPL-3 + file LICENSE |
| Version | 1.9.0 |
| URL | https://github.com/js2264/periodicDNA |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
|
