R/methMatsData.R

In jsemple19/methMatrix: Manipulate Lists of Methylation Matrices

#' Methylation matrix from dSMF analysis
#'
#' Data from dSMF experiment from two strains of C. elegans: wildtype N2 Bristol, and fog-2 mutant
#' (labelled 182). There are two samples for each strain.
#' The data is a list of lists: a list of samples, and each sample contains a list of methylation
#' matrices centered +-250bp around transcriptional start sites (TSSs) of C. elegans genes. The names of
#' the matrices in the list are the Wormbase gene names. The column names in the matrices are the genomic
#' cooridnates of cytosines that form part of a CpG or GpC motif. The rows of the matrices are pairs of
#' sequence reads generated by sequencing 400-500bp amplicons with 2x250 paired end Illumina sequencing.
#' Rownames are the read names.
#'
#' @docType data
#'
#' @usage data(methMats)
#'
#' @format An object of class list (it is a nested list)
#'
#' @keywords datasets
#'
#' @references Semple.J.I. & Meister P.
#'
#' @examples
#' data(methMats)
"methMats"