knitr::opts_chunk$set( collapse = TRUE, comment = "#>" ) knitr::opts_chunk$set( fig.path = "man/figures/" )
The goal of scTree is to provide allow biologists to identify a minimal set of genes from single-cell RNA-seq (scRNA-seq) data that can be used in downstream experiments. While there are already methods available to identify differentially expressed genes and markers that differ between subpopulations in scRNA-seqdata, there are generally too many genes in these lists to use in follow-up experiments.
Features suggesting pseudo-gating strategies to purify found populations via flow-cytometry, antibody querying and cross validations between datasets.
Please check our companion documentation website hosted at jspaezp.github.io/sctree.
Number of lines in roxygen comments:
r system2("bash", "-c \"grep -RP '^#' ./R | wc -l\"", stdout = TRUE)
Number of lines in R code:
r system2("bash", "-c \"grep -RP '^[^#]' ./R | grep -vP '^$' | wc -l \"", stdout = TRUE)
sessionInfo()
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.