In jspaezp/sctree: Tree based analysis of single rna-seq clusters

knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>"
)

This is done to emulate the plots from flow cytometry.

but using data from single cell rna-seq (seurat object ...)

library(Seurat)
library(sctree)

Relies on having done the standard seurat workflow before FindAllMarkers

plot_flowstyle(Seurat::pbmc_small, c("HLA-DPB1", "LYZ", "TYMP"))
plot_flowstyle(Seurat::pbmc_small, c("HLA-DPB1", "LYZ", "TYMP"), highlight_class = "1")

jspaezp/sctree documentation built on April 30, 2020, 10:36 p.m.