We provide an interface to export the decision trees as garnett classifiers for more information on the specification please visit: https://cole-trapnell-lab.github.io/garnett/docs/#submitting-a-classifier
library(sctree) data("small_5050_mix") DimPlot(small_5050_mix)
tree_fit <- fit_ctree(small_5050_mix, cluster = "0", minprob = 0.1, alpha = 0.01) plot(tree_fit)
plot_flowstyle(small_5050_mix, c("ASNS", "ADA", "TSC22D3"))
as.garnett(tree_fit)
tmp <- as.garnett(tree_fit) class(tmp)
tmp2 <- print(tmp) class(tmp2)
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