I am assuming you have already done your clustering and dimensional reduction using seurat and we have our seurat object.
For this examples we will use a dummy dataset that come bundled with the package
small_5050_mix
, this dataset comes originally from the 1:1 mixture of Jurkat
and 293T cells provided by 10x.
Original data can be found here:
library(sctree) library(Seurat) set.seed(6) data(small_5050_mix) small_5050_mix DimPlot(small_5050_mix, reduction = "tsne")
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