Files in jvwong/emRNASeq
Utilities for RNA sequencing analysis
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/emRNASeq.R
R/gdc.R
R/munge.R
R/rnaseqProcess.R
README.md
emRNASeq.Rproj
inst/extdata/workflow_i/Verhaak_JCI_2013_tableS1.txt
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inst/extdata/workflow_ii/tep_phenotypes.txt
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inst/www/app/public/bower_components/opencpu.js/opencpu-0.3.js
inst/www/app/public/bower_components/opencpu.js/opencpu-0.4.js
inst/www/app/public/bower_components/opencpu.js/opencpu-0.5.js
inst/www/app/public/bower_components/opencpu.js/params.json
inst/www/app/public/bower_components/urianchor/.bower.json
inst/www/app/public/bower_components/urianchor/.gitignore
inst/www/app/public/bower_components/urianchor/README.md
inst/www/app/public/bower_components/urianchor/jquery.uriAnchor.js
inst/www/app/public/bower_components/urianchor/package.json
inst/www/app/public/css/main.css
inst/www/app/public/js/babel-compiled.js
inst/www/app/public/js/deps.js
inst/www/app/server.js
inst/www/app/src/js/boot.js
inst/www/app/src/js/emdata.js
inst/www/app/src/js/main.js
inst/www/app/src/js/module.js.template
inst/www/app/src/js/munge.js
inst/www/app/src/js/process_rseq.js
inst/www/app/src/js/shell.js
inst/www/app/src/js/util.js
inst/www/app/src/lib/opencpu.js/opencpu-0.5-npm.js
inst/www/app/src/sass/_shell.scss
inst/www/app/src/sass/main.scss
inst/www/app/src/sass/modules/_colors.scss
inst/www/app/src/sass/modules/_fonts.scss
inst/www/app/src/sass/modules/_variables.scss
inst/www/build.sh
man/create_meta.Rd
man/de_test_rseq.Rd
man/emRNASeq.Rd
man/filter_rseq.Rd
man/format_class_gsea.Rd
man/format_expression_gsea.Rd
man/format_ranks_gsea.Rd
man/get_gene_model.Rd
man/hello.Rd
man/integrate_classes.Rd
man/map_names.Rd
man/merge_data.Rd
man/normalize_rseq.Rd
man/plot_de.Rd
man/retrieve_gdc_rnaseq.Rd
tests/testthat.R
tests/testthat/data/HD-1_htsqct.txt
tests/testthat/data/HD-2-1_htsqct.txt
tests/testthat/data/HD-3-1_htsqct.txt
tests/testthat/data/HD-4_htsqct.txt
tests/testthat/data/HD-5_htsqct.txt
tests/testthat/data/MGH-BrCa-H-11_htsqct.txt
tests/testthat/data/MGH-BrCa-H-59_htsqct.txt
tests/testthat/data/MGH-BrCa-H-66_htsqct.txt
tests/testthat/data/MGH-BrCa-H-68_htsqct.txt
tests/testthat/data/MGH-BrCa-H-74_htsqct.txt
tests/testthat/data/mock_gene_model.rds
tests/testthat/data/sample_merged_se.rds
tests/testthat/data/tep_phenotypes.txt
tests/testthat/test_munge.R
tests/testthat/test_rnaseqProcess.R
