README.md

In jvwong/emRNASeq: Utilities for RNA sequencing analysis

emRNASeq

This is an R package that supports R-based workflows in the Pathway Commons Guide.

Getting Started

Software Requirements

• R >= v3.0.5
• devtools

Install

Inside R, install the package using devtools

  > library(devtools)
  > devtools::install_github("jvwong/emRNASeq")

Webapp

Run the webapp locally in R/Studio using the single-user OpenCPU server.

1. Install and attach the package

```r

install.packages("opencpu") library(opencpu) opencpu$stop() opencpu$start(8000) ```

Gotcha: The opencpu server picks a random port. We want to run the server off of port 8000 so that the javascript app can communicate with it.

1. Run the app

```r

opencpu$browse("/library/emRNASeq/www/app/") ```

If not automatically opened, point your browser at http://localhost:8000/ocpu/library/emRNASeq/www/app/

jvwong/emRNASeq documentation built on May 20, 2019, 5:21 a.m.