plot_de: An M vs. A plot that highlights differentially expressed...
In jvwong/emRNASeq: Utilities for RNA sequencing analysis
Description
Takes in an topTags and DGEList objects and the classes that are being compared and uses the plotSmear to display the differentially expressed genes.
Usage
1
plot_de(filtered_dge, de_tested_tt, baseline, test, threshold = 0.05)
Arguments
filtered_dge
A DGEList, typically the output of filter_rseq
de_tested_tt
A topTags, typically the output of de_test_rseq
baseline
character array for the 'baseline' class
test
character array for the 'test' class.
threshold
the maximum value of FDR (q-value) for a gene to be considered differentially expressed
jvwong/emRNASeq documentation built on May 20, 2019, 5:21 a.m.
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Description
Takes in an topTags and DGEList objects and the classes that are being compared and uses the plotSmear to display the differentially expressed genes.
Usage
1 | plot_de(filtered_dge, de_tested_tt, baseline, test, threshold = 0.05)
|
Arguments
filtered_dge |
A |
de_tested_tt |
A |
baseline |
character array for the 'baseline' class |
test |
character array for the 'test' class. |
threshold |
the maximum value of FDR (q-value) for a gene to be considered differentially expressed |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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