de_test_rseq: Perform a pair-wise differential expression test on RNA-seq...
In jvwong/emRNASeq: Utilities for RNA sequencing analysis
Description
Usage
Arguments
Value
Description
Takes in a DGEList containing (normalized) RNA-seq data, performs a fit using estimateCommonDisp and estimateTagwiseDisp, a differential expression test via exactTest and multiple-testing correction using Benjamini-Hochberge method in topTags.
Usage
1
de_test_rseq(normalized_dge, baseline, test)
Arguments
normalized_dge
A DGEList, typically the output of calcNormFactors
baseline
character for the 'baseline' class
test
character for the 'test' class. DE testing will be performed relative to
Value
the fitted and adjusted TopTags object
jvwong/emRNASeq documentation built on May 20, 2019, 5:21 a.m.
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Description Usage Arguments Value
Description
Takes in a DGEList containing (normalized) RNA-seq data, performs a fit using estimateCommonDisp and estimateTagwiseDisp, a differential expression test via exactTest and multiple-testing correction using Benjamini-Hochberge method in topTags.
Usage
1 | de_test_rseq(normalized_dge, baseline, test)
|
Arguments
normalized_dge |
A |
baseline |
character for the 'baseline' class |
test |
character for the 'test' class. DE testing will be performed relative to |
Value
the fitted and adjusted TopTags object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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