format_ranks_gsea: Generate text file content for genes ranked by a funtion of...
In jvwong/emRNASeq: Utilities for RNA sequencing analysis
Description
Usage
Arguments
Value
Description
Creates content conforming to GSEA's text file format for a ranked list file (.rnk). The column header names are arbitrary. The gene rank is based on: sign(log(fold_change) * -log( pvalue ).
Usage
1
format_ranks_gsea(de_tested_tt)
Arguments
de_tested_tt
This is the TopTags object emerging from process_rseq
Value
a data.frame of the ranks
jvwong/emRNASeq documentation built on May 20, 2019, 5:21 a.m.
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Description Usage Arguments Value
Description
Creates content conforming to GSEA's text file format for a ranked list file (.rnk). The column header names are arbitrary. The gene rank is based on: sign(log(fold_change) * -log( pvalue ).
Usage
1 | format_ranks_gsea(de_tested_tt)
|
Arguments
de_tested_tt |
This is the |
Value
a data.frame of the ranks
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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