merge_data: Merge a set of files representing RNA sequencing gene counts

Description Usage Arguments Value

Description

1. Default parameter is do nothing (already matching gene set ids) 2. Optional parameter is to map from input to target namespace Data files must be in tab-delimited format with two columns and no header. The classes are defined by a meta data file which is a tab-delimited text file with headers for the sample read 'id' and 'class'. Each row entry is a corresponding filename and class assignment. Only accepts pair-wise comparison so there must be exactly 2 classes.

Usage

1
merge_data(metadata_file, species, source_name, target_name, ...)

Arguments

metadata_file

A metadata file

species

A character array indicating the species with which to fetch gene models from bioMart, If NULL this mapping will not be performed

source_name

attribute (gene namespace) input

target_name

attribute (gene namespace) desired

Value

A SummarizedExperiment


jvwong/emRNASeq documentation built on May 20, 2019, 5:21 a.m.