Man pages for jvwong/emRNASeq
Utilities for RNA sequencing analysis
| create_meta | Create a data frame housing the RNA-seq metadata |
| de_test_rseq | Perform a pair-wise differential expression test on RNA-seq... |
| emRNASeq | emRNASeq: A package for pathways analysis of RNA sequencing... |
| filter_rseq | Filter RNA-seq data for minimumnumber of counts in a class |
| format_class_gsea | Generate categorical class text file content |
| format_expression_gsea | Generate an expression text file content |
| format_ranks_gsea | Generate text file content for genes ranked by a funtion of... |
| get_gene_model | Retrieve the gene info |
| hello | Hello, World! |
| integrate_classes | Integrate the sample class assignments |
| map_names | Normalize the data.frame nameswith those on a 'GRanges'... |
| merge_data | Merge a set of files representing RNA sequencing gene counts |
| normalize_rseq | Think wrapper for RNASeq normalization package of choice... |
| plot_de | An M vs. A plot that highlights differentially expressed... |
| retrieve_gdc_rnaseq | Get TCGA RNAseq data from GDC |
