legacyCountConverter: converts legacy tileseq count data into the new count file...

In jweile/tileseqMave: TileSeq MAVE Analysis pipeline

converts legacy tileseq count data into the new count file format

Description

converts legacy tileseq count data into the new count file format

Usage

legacyCountConverter(
  dataDir,
  outdir,
  mut2funcFile = paste0(dataDir, "mut2func_info.csv"),
  countFolder = paste0(dataDir, "mutationCallfile/"),
  logger = NULL
)

Arguments

dataDir	path to the existing data main directory
outdir	path to the desired output directory
mut2funcFile	path to the mut2func file. Defaults to <dataDir>/mut2func_info.csv
countFolder	path the mutationCallfile folder. Defaults to <dataDir>/mutationCallfile/
logger	An optional yogilogger object. Defaults to NULL, which just prints to stdout.

Value

NULL. Results are written to file.

jweile/tileseqMave documentation built on April 5, 2024, 4:51 p.m.