scaleScores: perform scaling of logPhi into final scores

In jweile/tileseqMave: TileSeq MAVE Analysis pipeline

perform scaling of logPhi into final scores

Description

perform scaling of logPhi into final scores

Usage

scaleScores(
  dataDir,
  scoreDir = NA,
  outDir = NA,
  paramFile = paste0(dataDir, "parameters.json"),
  srOverride = FALSE,
  bnOverride = FALSE,
  autoPivot = FALSE,
  useSimpleAverages = FALSE,
  codonQuorum = c("off", "simple", "harsh")
)

Arguments

dataDir	working data directory
scoreDir	input directory for scores, defaults to subdirectory with latest timestamp ending in _scores.
outDir	output directory, defaults to name of input directory with _QC tag attached.
paramFile	input parameter file. defaults to <dataDir>/parameters.json
srOverride	single replicate override
bnOverride	bottleneck filter override

Value

NULL. Results are written to file.

jweile/tileseqMave documentation built on April 5, 2024, 4:51 p.m.