selectionQC: run library quality control (QC)

In jweile/tileseqMave: TileSeq MAVE Analysis pipeline

run library quality control (QC)

Description

run library quality control (QC)

Usage

selectionQC(
  dataDir,
  countDir = NA,
  scoreDir = NA,
  outDir = NA,
  paramFile = paste0(dataDir, "parameters.json"),
  srOverride = FALSE
)

Arguments

dataDir	working data directory
countDir	input directory for counts, defaults to subdirectory with latest timestamp ending in _mut_count.
scoreDir	input directory for scores, defaults to subdirectory with latest timestamp ending in _scores.
outDir	output directory, defaults to name of input directory with _QC tag attached.
paramFile	input parameter file. defaults to <dataDir>/parameters.json

Value

NULL. Results are written to file.

jweile/tileseqMave documentation built on April 5, 2024, 4:51 p.m.