tileCensus: Perform census on tile to determine what mutations are...

In jweile/tileseqMave: TileSeq MAVE Analysis pipeline

Perform census on tile to determine what mutations are present

Description

Perform census on tile to determine what mutations are present

Usage

tileCensus(
  tile,
  allTiles,
  maxChanges,
  nsAllMeans,
  isFrameshift,
  isInFrameIndel,
  numChanges
)

Arguments

tile	the tile number being analyzed
allTiles	table containing all tiles
maxChanges	maximum number of mutations allowed on x-axis of plot
nsAllMeans	table with mean frequency across nonselect technical replicates
isFrameshift	vector containing flags of whether a variant is a frameshift
isInFrameIndel	vector containing flags of whether a variant is an indel
numChanges	vector containing number of nucleotide changes in a given mutational context

Value

table containing population breakdown of variant types within tile

jweile/tileseqMave documentation built on April 5, 2024, 4:51 p.m.