CONTRIBUTING.md

In kendomaniac/docker4seq: Running NGS computing demanding applications, e.g reads mapping and counting, wrapped in docker containers

Steps required to submit a new application/workflow:

• Edit the skeleton.R function and the ubuntu docker image (docker.io/repbioinfo/ubuntu) to create the new application.

  • Please have a look at: Controlling jobs in a docker image, a brief tutorial.

• Create a public docker repository for the docker image, e.g. at docker.com.

• Create a workflow.Rmd vignette using RStudio and publish it via RStudio. As example of a vignette see docker4seq vignette.

• Once the docker image, the function(s) and vignette are ready please contact [e-mail].

  • We will test and incorporate the code in docker4seq package.

  • Mantainers will be responsable of the maintainance of their application(s).

If you are interested to participate to the project or if you need more information please contact [e-mail]

kendomaniac/docker4seq documentation built on April 8, 2024, 5:39 p.m.