runDocker: Run docker container

In kendomaniac/docker4seq: Running NGS computing demanding applications, e.g reads mapping and counting, wrapped in docker containers

Run docker container

Description

This is an internal function executing a docker container. Not to be used by users.

Usage

runDocker(group = "docker", params = NULL, DockerSwarm = FALSE)

Arguments

group	a character string. Two options: "sudo" or "docker", depending to which group the user belongs
params	a character string containing all parameters needed to tun the docker container
DockerSwarm	a bolean value used to enable docker execution in swarm mode.

Value

0 if success, 1 if parameters are missing, 2 if the group is neither sudo or docker, 3 if docker execution fails.

Author(s)

Raffaele Calogero

Examples

## Not run: 
    #running runDocker
     runDocker(group="docker", params=NULL)


## End(Not run)

kendomaniac/docker4seq documentation built on April 8, 2024, 5:39 p.m.