skeleton: A skeleton function to handle a docker containier

In kendomaniac/docker4seq: Running NGS computing demanding applications, e.g reads mapping and counting, wrapped in docker containers

A skeleton function to handle a docker containier

Description

This function executes a ubuntu docker that produces as output helloworld.txt file

Usage

skeleton(group = c("sudo", "docker"), scratch.folder, data.folder)

Arguments

group	a character string. Two options: sudo or docker, depending to which group the user belongs
scratch.folder	a character string indicating the path of the scratch folder
data.folder	a character string indicating the folder where input data are located and where output will be written

Author(s)

Name Family name, myemail [at] somewhere [dot] org, Affiliation

Examples

## Not run: 
    #running skeleton
    skeleton(group="docker", scratch.folder="/Users/raffaelecalogero/Desktop/scratch", 
    data.folder=getwd())

## End(Not run)

kendomaniac/docker4seq documentation built on Sept. 3, 2024, 6:42 p.m.