clusterOntologyDF: Cluster Ontology DataFrame
In kharchenkolab/cacoa: Case-Control Analysis Tools for Single-Cell RNA-Seq
clusterOntologyDF R Documentation
Cluster Ontology DataFrame
Description
Cluster Ontology DataFrame
Usage
clusterOntologyDF(ont.df, clust.naming, ind.h = 0.66, total.h = 0.5)
Arguments
ind.h
Cut height for hierarchical clustering of terms per cell type.
Approximately equal to the fraction of genes, shared between the GOs. Default: 0.66.
total.h
Cut height for hierarchical clustering of GOs across all subtypes.
Approximately equal to the fraction of subtypes for which two GOs should belong to the same cluster.
Default: 0.5.
Value
List containing:
-
df: data.frame with information about individual gene ontologies and columns Cluster and ClusterName
for the clustering info
-
hclust: the object of class hclust with hierarchical clustering of GOs across all
subtypes
kharchenkolab/cacoa documentation built on Nov. 8, 2024, 6:06 a.m.
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| clusterOntologyDF | R Documentation |
Cluster Ontology DataFrame
Description
Cluster Ontology DataFrame
Usage
clusterOntologyDF(ont.df, clust.naming, ind.h = 0.66, total.h = 0.5)
Arguments
ind.h |
Cut height for hierarchical clustering of terms per cell type. Approximately equal to the fraction of genes, shared between the GOs. Default: 0.66. |
total.h |
Cut height for hierarchical clustering of GOs across all subtypes. Approximately equal to the fraction of subtypes for which two GOs should belong to the same cluster. Default: 0.5. |
Value
List containing:
-
df: data.frame with information about individual gene ontologies and columnsClusterandClusterNamefor the clustering info -
hclust: the object of class hclust with hierarchical clustering of GOs across all subtypes
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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