estimateCellDensityKde: Estimate cell density in giving embedding, density will be...

In kharchenkolab/cacoa: Case-Control Analysis Tools for Single-Cell RNA-Seq

Estimate cell density in giving embedding, density will be estimated for individual samples

Description

Estimate cell density in giving embedding, density will be estimated for individual samples

Usage

estimateCellDensityKde(
  emb,
  sample.per.cell,
  sample.groups,
  bins,
  bandwidth = 0.05,
  expansion.mult = 0.05
)

Arguments

emb	cell embedding matrix
sample.per.cell	Named sample factor with cell names (default: stored vector)
sample.groups	A two-level factor on the sample names describing the conditions being compared (default: stored vector)
bins	number of bins for density estimation, default 400

kharchenkolab/cacoa documentation built on Nov. 8, 2024, 6:06 a.m.