estimateCellDensityGraph: Estimate graph smooth based cell density

In kharchenkolab/cacoa: Case-Control Analysis Tools for Single-Cell RNA-Seq

Estimate graph smooth based cell density

Description

Estimate graph smooth based cell density

Usage

estimateCellDensityGraph(
  graph,
  sample.per.cell,
  sample.groups,
  n.cores = 1,
  beta = 30,
  m = 50,
  verbose = TRUE
)

Arguments

graph	input graph
sample.per.cell	Named sample factor with cell names (default: stored vector)
sample.groups	A two-level factor on the sample names describing the conditions being compared (default: stored vector)
n.cores	number of cores
m	numeric Maximum order of Chebyshev coeff to compute (default=50)

kharchenkolab/cacoa documentation built on Nov. 8, 2024, 6:06 a.m.