estimateDEForTypeDESeq: estimate DE using DESeq2

In kharchenkolab/cacoa: Case-Control Analysis Tools for Single-Cell RNA-Seq

estimate DE using DESeq2

Description

estimate DE using DESeq2

Usage

estimateDEForTypeDESeq(
  cm,
  meta,
  design.formula,
  ref.level,
  target.level,
  test.type,
  ...
)

Arguments

cm	count matrix
meta	data frame containing meta data
design.formula	design formula according to
ref.level	reference level, e.g. controls
target.level	target level, e.g. disease
test.type	test type incorporated in DESeq2, either "Wald" or "LRT"
...	additional parameters forwarded to DESeq2

kharchenkolab/cacoa documentation built on Nov. 8, 2024, 6:06 a.m.