Global functions | |
---|---|
Cacoa | Man page |
addZScores | Man page Source code |
adjustZScoresWithPermutations | Source code |
bestPartition | Source code |
brewerPalette | Man page Source code |
checkData | Man page Source code |
checkDataAndCells | Man page Source code |
checkDataGroups | Man page Source code |
checkDataSbp | Man page Source code |
checkDataTree | Man page Source code |
checkGroups | Man page Source code |
checkPackageInstalled | Source code |
checkSbp | Man page Source code |
checkSbpWhole | Man page Source code |
checkTree | Man page Source code |
clusterFreeZScoreMat | Source code |
clusterOntologyDF | Man page |
clusteredOntologyDotplot | Man page |
collapseFamilies | Man page |
colwiseBinaryDistance | Source code |
constructBestPartitionTree | Man page Source code |
constructTree | Man page Source code |
constructTreeUp | Source code |
constructTreeUpDown | Source code |
createDendrogram | Man page Source code |
diffCellDensity | Man page |
distTreeOrder | Man page Source code |
distanceBetweenTerms | Man page |
estimateCdaSpace | Source code |
estimateCellDensityGraph | Man page |
estimateCellDensityKde | Man page Source code |
estimateClusterFreeExpressionShiftsC | Source code |
estimateClusterFreeExpressionShiftsInfo | Source code |
estimateCorrelationDistance | Source code |
estimateDEPerCellTypeInner | Man page |
estimateExpressionChange | Man page Source code |
estimateGeneClustersLeiden | Source code |
estimateGeneClustersPam | Source code |
estimateGeneProgramsFabia | Man page Source code |
estimateOntologyFamilies | Man page |
estimateOntologyFromIds | Man page |
estimateStabilityPerCellType | Source code |
extractCellGraph | Man page Source code |
extractCellGraph.Conos | Man page Source code |
extractCellGraph.Seurat | Man page Source code |
extractCellGroups | Man page Source code |
extractCellGroups.Conos | Man page Source code |
extractCellGroups.Seurat | Man page Source code |
extractEmbedding | Man page |
extractEmbedding.Conos | Man page |
extractEmbedding.Seurat | Man page |
extractGeneExpression | Man page |
extractGeneExpression.Conos | Man page |
extractGeneExpression.Seurat | Man page |
extractGeneExpression.dgCMatrix | Man page |
extractJointCountMatrix | Man page |
extractJointCountMatrix.Conos | Man page |
extractJointCountMatrix.Seurat | Man page |
extractJointCountMatrix.dgCMatrix | Man page |
extractOdGenes | Man page |
extractOdGenes.Conos | Man page |
extractOdGenes.Seurat | Man page |
extractRawCountMatrices | Man page Source code |
extractRawCountMatrices.Conos | Man page Source code |
extractRawCountMatrices.Seurat | Man page Source code |
extractRawCountMatrices.dgCMatrix | Man page |
extractSamplePerCell | Man page |
extractSamplePerCell.Conos | Man page |
extractSamplePerCell.Seurat | Man page |
geneProgramSimilarityScores | Source code |
getCdaLoadings | Man page Source code |
getDEEntrezIdsSplitted | Man page Source code |
getDensityContour | Man page |
getGenePalette | Man page Source code |
getLoadings | Man page Source code |
getLogFreq | Man page Source code |
getNodeBalances | Man page Source code |
getRndBalances | Man page Source code |
getRndPartition | Man page Source code |
getRndSbp | Man page Source code |
identifyFamilies | Man page |
jaccardPwPval | Source code |
jaccardPwTop | Source code |
mapGeneIds | Source code |
mapIds | Source code |
plotCellLoadings | Source code |
plotCellTypeSizeDep | Man page |
plotCodaSpaceInner | Source code |
plotContrastTree | Man page Source code |
plotCountBoxplotsPerType | Man page Source code |
plotDensityKde | Man page |
plotHeatmap | Man page Source code |
plotMeanMedValuesPerCellType | Man page |
plotNCellRegression | Man page Source code |
plotOntologyFamily | Man page |
plotStability | Source code |
prepareOntologyPlotDF | Source code |
prepareSamplesForDE | Source code |
produceResampling | Man page Source code |
projdiff | Source code |
rblapply | Man page Source code |
removeGroupEffect | Man page Source code |
saveDEasJSON | Man page Source code |
sbp2tree | Man page Source code |
sbpInNodes | Source code |
strpart | Source code |
subsetMatricesWithCommonGenes | Source code |
summarizeDEResamplingResults | Man page |
theme_legend_position | Man page Source code |
tree2dendro_my | Source code |
validateDEPerCellTypeParams | Man page Source code |
wrap_strings | Man page |
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