getDEEntrezIdsSplitted: Get DE ENTREZ IDs
In kharchenkolab/cacoa: Case-Control Analysis Tools for Single-Cell RNA-Seq
getDEEntrezIdsSplitted R Documentation
Get DE ENTREZ IDs
Description
Filter and prepare DE genes for ontology calculations
Usage
getDEEntrezIdsSplitted(de.raw, org.db, p.adj = 1)
Arguments
de.raw
List with differentially expressed genes per cell group
org.db
Organism database, e.g., org.Hs.eg.db for human or org.Ms.eg.db for mouse. Input must be of class 'OrgDb'
p.adj
Adj. P cutoff for filtering DE genes (default=0.05)
Value
A list containing DE ENSEMBL gene IDs, and filtered DE genes
kharchenkolab/cacoa documentation built on Nov. 8, 2024, 6:06 a.m.
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| getDEEntrezIdsSplitted | R Documentation |
Get DE ENTREZ IDs
Description
Filter and prepare DE genes for ontology calculations
Usage
getDEEntrezIdsSplitted(de.raw, org.db, p.adj = 1)
Arguments
de.raw |
List with differentially expressed genes per cell group |
org.db |
Organism database, e.g., org.Hs.eg.db for human or org.Ms.eg.db for mouse. Input must be of class 'OrgDb' |
p.adj |
Adj. P cutoff for filtering DE genes (default=0.05) |
Value
A list containing DE ENSEMBL gene IDs, and filtered DE genes
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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