extractJointCountMatrix: Extract the joint count matrix from the object

In kharchenkolab/cacoa: Case-Control Analysis Tools for Single-Cell RNA-Seq

Extract the joint count matrix from the object

Description

Extract the joint count matrix from the object

Usage

extractJointCountMatrix(object, raw = TRUE, ...)

## S3 method for class 'Conos'
extractJointCountMatrix(object, raw = TRUE)

## S3 method for class 'Seurat'
extractJointCountMatrix(object, raw = TRUE, transposed = TRUE, sparse = TRUE)

## S3 method for class 'dgCMatrix'
extractJointCountMatrix(object, raw = TRUE)

Arguments

object	object from which to extract the cell groups
raw	boolean If TRUE, return merged "raw" count matrices (default=TRUE)
...	additional parameters to be passed to extractJointCountMatrix
transposed	boolean If TRUE, return merged transposed count matrices (default=TRUE)
sparse	boolean If TRUE, return merged the sparse dgCMatrix matrix (default=TRUE)

kharchenkolab/cacoa documentation built on Nov. 8, 2024, 6:06 a.m.