getLoadings: Get loadings by different methods
In kharchenkolab/cacoa: Case-Control Analysis Tools for Single-Cell RNA-Seq
getLoadings R Documentation
Get loadings by different methods
Description
Get loadings by different methods
Usage
getLoadings(
cnts,
groups,
method = c("lda", "svm", "cda", "cda.std"),
ref.cell.type = NULL
)
Arguments
cnts
Counts of cell typer in samples. Rows - samples, columns - cell types
groups
Vector with boolean values. TRUE - sample in the case group, FALSE - sample in the control group
method
Method to get loadings
ref.cell.type
Reference cell type
Value
Updated data frame with Z scores
kharchenkolab/cacoa documentation built on Nov. 8, 2024, 6:06 a.m.
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| getLoadings | R Documentation |
Get loadings by different methods
Description
Get loadings by different methods
Usage
getLoadings(
cnts,
groups,
method = c("lda", "svm", "cda", "cda.std"),
ref.cell.type = NULL
)
Arguments
cnts |
Counts of cell typer in samples. Rows - samples, columns - cell types |
groups |
Vector with boolean values. TRUE - sample in the case group, FALSE - sample in the control group |
method |
Method to get loadings |
ref.cell.type |
Reference cell type |
Value
Updated data frame with Z scores
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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