plotHeatmap: Plot heatmap

In kharchenkolab/cacoa: Case-Control Analysis Tools for Single-Cell RNA-Seq

Plot heatmap

Description

Plot heatmap

Usage

plotHeatmap(
  df,
  color.per.group = NULL,
  row.order = TRUE,
  col.order = TRUE,
  legend.position = "right",
  size.df = NULL,
  size.range = c(1, 5),
  size.legend.title = "size",
  legend.key.width = unit(8, "pt"),
  legend.title = "-log10(p-value)",
  x.axis.position = "top",
  color.range = NULL,
  plot.theme = ggplot2::theme_get(),
  symmetric = FALSE,
  palette = NULL,
  font.size = 8,
  distance = "manhattan",
  clust.method = "complete",
  grid.color = "gray50"
)

Arguments

df	Data frame with plot data
color.per.group	Colors per cell group (default=NULL)
row.order	Forced row order (default=NULL)
col.order	Forced column order (default=NULL)
legend.position	Position of legend in plot. See ggplot2::theme (default="right")
size.df	(default=NULL)
size.range	(default=c(1, 5))
size.legend.title	(default="size")
legend.key.width	(default=unit(8, "pt))
legend.title	Title on plot (default="-log10(p-value)")
x.axis.position	Position of x axis (default="top")
color.range	Range for filling colors
plot.theme	(default=ggplot2::theme_get())
symmetric	boolean (default=FALSE)
palette	(default=NULL)
font.size	integer (default=8)
distance	character string (default="manhattan")
clust.method	character string (default="complete")
grid.color	Color of the grid. Set to "transparent" to disable the grid. (default: "gray50")

Value

A ggplot2 object

kharchenkolab/cacoa documentation built on Nov. 8, 2024, 6:06 a.m.