produceResampling: This function produces the resampling dataset

In kharchenkolab/cacoa: Case-Control Analysis Tools for Single-Cell RNA-Seq

This function produces the resampling dataset

Description

This function produces the resampling dataset

Usage

produceResampling(cnts, groups, n.perm = 1000, seed = 239)

Arguments

cnts	Counts of cell types in samples. Rows - samples, columns - cell types
groups	Vector with boolean values. TRUE - sample in the case group, FALSE - sample in the control group
seed	random seed
n.iter	Number of permutations
remain.groups	TRUE - if the labels of groups remain, FALSE - if to produce the null distribution
replace.samples	TRUE - is bootstrap on samples, FALAE - if to remain samples

Value

Updated data frame with Z scores

kharchenkolab/cacoa documentation built on Nov. 8, 2024, 6:06 a.m.