plotCountBoxplotsPerType: Plot count boxplots per type

In kharchenkolab/cacoa: Case-Control Analysis Tools for Single-Cell RNA-Seq

Plot count boxplots per type

Description

Plot count boxplots per type

Usage

plotCountBoxplotsPerType(
  count.df,
  y.lab = "count",
  x.lab = "",
  y.expand = 0.05,
  show.significance = FALSE,
  jitter.width = 0.15,
  notch = FALSE,
  legend.position = "right",
  alpha = 0.2,
  size = 0.5,
  palette = NULL,
  adjust.pvalues = TRUE,
  plot.theme = theme_get(),
  pvalue.y = NULL,
  ns.symbol = "",
  p.adjust.method = "BH"
)

Arguments

count.df	data.frame with columns group, variable and value
jitter.width	width of the point jitter (default: 0.15)
notch	Whether to show notch in the boxplots
legend.position	Position of legend in plot. See ggplot2::theme (default="right")
alpha	Transparency level on the data points (default: 0.2)
size	marker size (default: 0.5)

kharchenkolab/cacoa documentation built on May 10, 2022, 3:42 a.m.