plotCellTypeSizeDep: Show a scatter plot of cell-type values vs. number of cells...

In kharchenkolab/cacoa: Case-Control Analysis Tools for Single-Cell RNA-Seq

Show a scatter plot of cell-type values vs. number of cells per cell type

Description

Show a scatter plot of cell-type values vs. number of cells per cell type

Usage

plotCellTypeSizeDep(
  df,
  cell.groups,
  palette = NULL,
  font.size = 4,
  ylab = "expression distance",
  yline = 1,
  show.regression = TRUE,
  show.whiskers = TRUE,
  plot.theme = theme_get()
)

Arguments

df	a data frame with $value and $Type columns, just like plotMeanValuesPerCellType
cell.groups	a cell groups vector for calculating number of cells per cell type
palette	cell type palette
ylab	y axis label
yline	value at which a horizontal reference value should be plotted
show.whiskers	whether se values should be plotted

Value

ggplot2 object

kharchenkolab/cacoa documentation built on Nov. 8, 2024, 6:06 a.m.