getDensityContour: Extract contour from embedding

In kharchenkolab/cacoa: Case-Control Analysis Tools for Single-Cell RNA-Seq

Extract contour from embedding

Description

Extract contour from embedding

Usage

getDensityContour(
  emb,
  cell.groups,
  group,
  color = "black",
  linetype = 2,
  conf = "10%",
  bandwidth = NULL,
  ...
)

Arguments

emb	cell embedding matrix
cell.groups	vector of cell type annotation
group	specify cell types for contour, multiple cell types are also supported
conf	confidence interval of contour

kharchenkolab/cacoa documentation built on Nov. 8, 2024, 6:06 a.m.