calc_autocorrelation: Calculate lagged autocorrelation

In kimberlyroche/ROL: What the package does (short line)

Description

Calculate lagged autocorrelation

Usage

calc_autocorrelation(
  data,
  lag_units = "weeks",
  lag_max = 52,
  use_lr = "ilr",
  alr_ref = NULL,
  resample = FALSE,
  resample_rate = 0.2
)

Arguments

data	a phyloseq object
lag_units	units of autocorrelation lag ("weeks", "months", "seasons")
lag_max	maximum lagged difference to evaluate
use_lr	log ratio representation ("ilr", "alr", "clr")
alr_ref	if using the additive log ratio (ALR), which reference taxon index to use
resample	use resampling for uncertainty estimation
resample_rate	percent of samples to randomly subsample if resampling

Value

data.frame of (bounded, if resampled) autocorrelation, indexed by lag in lag_units

Examples

lagged_ac <- calc_autocorrelation(data, lag_units="weeks", lag_max=52, use_lr="ilr", alr_ref=NULL, resample=FALSE, resample_rate=0.2)

kimberlyroche/ROL documentation built on Dec. 10, 2020, 2:18 a.m.