get_all_vs_one_correlations: Get correlations between one microbe and all others at...

In kimberlyroche/ROL: What the package does (short line)

Description

Get correlations between one microbe and all others at designated taxonomic level

Usage

get_all_vs_one_correlations(
  taxon_idx,
  tax_level = "ASV",
  logratio = "alr",
  Sigmas = NULL
)

Arguments

taxon_idx	the logratio coordinate to render correlations against
tax_level	taxonomic level at which to agglomerate data
logratio	logratio representation to use (e.g. "alr", "ilr", "clr")
Sigmas	optional list (indexed by host short name) of MAP estimates of microbial covariance; if not provided, this will be loaded

Value

correlation matrix of dimensions number of hosts x number of logratio taxa - 1

Examples

interactions <- get_all_vs_one_correlations(taxon_idx = 1, tax_level = "ASV", logratio = "alr")

kimberlyroche/ROL documentation built on Dec. 10, 2020, 2:18 a.m.