get_deepest_assignment: Get highest taxonomic level to which a microbe is resolved...
In kimberlyroche/ROL: What the package does (short line)

Description Usage Arguments Value Examples

Get highest taxonomic level to which a microbe is resolved (i.e. not NA)

1	get_deepest_assignment(taxonomy, deepest_tax_level = "genus")

`taxonomy`	a named list of taxonomic assignment for a designated sequence variant
`deepest_tax_level`	the finest resolution taxonomy level to return (if possible)

readable label of the form "phylum Tenericutes"

data <- load_data(tax_level="ASV")
alr_ref <- formalize_parameters(data)$alr_ref
taxonomy <- get_taxonomy(data, alr_ref)
# get deepest resolve level for the first sequence variant
label <- get_deepest_assignment(taxonomy[1,], deepest_tax_level="species")