get_other_labels: Get other annotations (e.g. sample number) for hosts in data...

In kimberlyroche/ROL: What the package does (short line)

Description

Get other annotations (e.g. sample number) for hosts in data set

Usage

get_other_labels(
  centroids,
  tax_level = "ASV",
  annotation = "group",
  MAP = FALSE
)

Arguments

centroids	data.frame of per-host centroids from posterior embedding
tax_level	taxonomic level at which to agglomerate data
annotation	label to assign (e.g. individual)
MAP	use MAP estimate model output instead of full posterior output

Details

Output is the centroids data.frame appended with the desired annotation. Available annotations are: group, matgroup, samplenumber, sampledensity, mom, dad, momrank, drought, largegroup, momdied, competingsib, earlyadversity, birthrate_all, birthrate_surviving, alphadiv, wetproportion

Value

data.frame

Examples

centroids <- readRDS(file.path("output","plots","genus","Sigma_ordination_centroids.rds"))
labelled_centoids <- get_other_labels(centroids, tax_level="ASV", annotation="group", MAP=FALSE)

kimberlyroche/ROL documentation built on Dec. 10, 2020, 2:18 a.m.