calc_universality_score: Calculate a score (0.0 to 1.0) for the "universality" of...
In kimberlyroche/ROL: What the package does (short line)
Description
Usage
Arguments
Details
Value
Examples
View source: R/universal_microbes.R
Description
Calculate a score (0.0 to 1.0) for the "universality" of given microbial interaction
Usage
1
Arguments
x
vector of correlations between a pair of CLR microbes across individuals
Details
An element of x should be the (MAP) correlation between a pair of CLR microbes.
The length of x is assumed equal to the number of hosts.
Value
score
Examples
1
2
interaction_matrix <- get_universal_interactions(tax_level="ASV")
score <- calc_universality_score(interaction_matrix[,1])
kimberlyroche/ROL documentation built on Dec. 10, 2020, 2:18 a.m.
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Description Usage Arguments Details Value Examples
View source: R/universal_microbes.R
Description
Calculate a score (0.0 to 1.0) for the "universality" of given microbial interaction
Usage
1 |
Arguments
x |
vector of correlations between a pair of CLR microbes across individuals |
Details
An element of x should be the (MAP) correlation between a pair of CLR microbes. The length of x is assumed equal to the number of hosts.
Value
score
Examples
1 2 | interaction_matrix <- get_universal_interactions(tax_level="ASV")
score <- calc_universality_score(interaction_matrix[,1])
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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