calc_posterior_distances: Calculate distances between all posterior samples of either...
In kimberlyroche/ROL: What the package does (short line)

Description Usage Arguments Details Examples

Calculate distances between all posterior samples of either Sigma or Lambda

calc_posterior_distances(
  tax_level = "ASV",
  which_measure = "Sigma",
  which_distance = "Riemannian",
  MAP = FALSE,
  spike_in = FALSE
)

`tax_level`	taxonomic level at which to agglomerate data
`which_measure`	estimated object to embed, either Lambda or Sigma
`which_distance`	ignored for Lambda; for Sigma allowable options are "Riemannian" (default) or "Euclidean"
`MAP`	use MAP estimate model output instead of full posterior output
`spike_in`	copy and permute the samples and calculate distances to these too, so as to give upper bound on distances

Distance matrix between posterior samples saved to designated output directory. Saves a list containing distance matrix and labels of each row or column (by host).