get_paired_trajectories: Pull a collection date-aligned trajectories for a pair of...

In kimberlyroche/rulesoflife:

Pull a collection date-aligned trajectories for a pair of taxa from a given host's prediction set (list returned by get_predictions_host_list())

Description

Pull a collection date-aligned trajectories for a pair of taxa from a given host's prediction set (list returned by get_predictions_host_list())

Usage

get_paired_trajectories(
  dates,
  coord1,
  coord2,
  host,
  common_baseline,
  predictions,
  center = NULL,
  mean_only = FALSE
)

Arguments

dates	named list of dates in YYYY-MM-DD format indexed by host short name
coord1	index of taxon 1
coord2	index of taxon 2
host	host short name
common_baseline	earliest date to use for all hosts (YYYY-MM-DD format)
predictions	named list of predicted (interpolated) Eta matrices indexed by host short name
center	center to use for taxa (e.g. 0)
mean_only	return mean rather than quantiles

kimberlyroche/rulesoflife documentation built on May 7, 2023, 11:08 a.m.